RIKEN BRAIN SCIENCE INSTITUTE (RIKEN BSI)

Faculty Publications

Tomomi  Shimogori

Tomomi Shimogori, Ph.D.

Molecular Mechanisms of Thalamus Development / Team Leader

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  1. 1

    Matsui A, Tran M, Yoshida AC, Kikuchi SS, U M, Ogawa M, and Shimogori T.: "BTBD3 Controls Dendrite Orientation Toward Active Axons in Mammalian Neocortex.", Science, 342 (6162):1114-8. doi: 10.1126/science.1244505. (2013)

  2. 2

    Huilgol D, Udin S, Shimogori T, Saha B, Roy A, Aizawa S, Hevner RF, Meyer G, Ohshima T, Pleasure SJ, Zhao Y, and Tole S.: "Dual origins of the mammalian accessory olfactory bulb revealed by an evolutionarily conserved migratory stream.", Nat Neurosci, doi: 10.1038/nn.3297. (2013)

  3. 3

    Kumagai A, Ando R, Miyatake H, Greimel P, Kobayashi T, Hirabayashi Y, Shimogori T, and Miyawaki A.: "A bilirubin-inducible fluorescent protein from eel muscle.", Cell, 153:1602-11 (2013)

  4. 4

    Nakagawa Y, and Shimogori T: "Diversity of thalamic progenitor cells and postmitotic neurons.", Eur J Neurosci, 35(10), 1554-62 (2012)

  5. 5

    Mashiko H, Yoshida AC, Kikuchi SS, Niimi K, Takahashi E, Aruga J, Okano H, and Shimogori T.: "Comparative anatomy of marmoset and mouse cortex from genomic expression.", J Neurosci, 32:5039-53. (2012)

  6. 6

    Hama H, Kurokawa H, Kawano H, Ando R, Shimogori T, Noda H, Fukami K, Sakaue-Sawano A, and Miyawaki A: "Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.", Nat Neurosci, 14: 1481-8 (2011)

  7. 7

    Matsui A, Yoshida AC, Kubota M, Ogawa M, and Shimogori T.: "Mouse in utero electroporation: Controlled spatio-temporal gene transefection.", J Vis Exp, 54 pii: 3024 (2011)

  8. 8

    Yuge K, Kataoka A, Yoshida AC, Itoh D, Aggarwal M, Mori S, Blackshaw S, and Shimogori T.: "Region-specific expression in early postnatal mouse thalamus.", J Comp Neurol., 519; 544-61. (2011)

  9. 9

    Suzuki-Hirano A, Ogawa M, Kataoka A, Yoshida AC, Itoh D, Ueno M, Blackshaw S, and Shimogori T: "Dynamic spatiotemporal gene expression in embryonic mouse thalamus.", J Comp Neurol, 519; 528-43 (2011)

  10. 10

    Blackshaw S, Scholpp S, Placzek M, Ingraham H, Simerly R, and Shimogori T: "Molecular pathways controlling development of thalamus and hypothalamus: from neural specification to circuit formation.", J Neurosci, 30(45), 14925-30 (2010)

  11. 11

    Toyoda R, Assimacopoulos S, Wilcoxon J, Taylor A, Feldman P, Suzuki-Hirano A, Shimogori T, and Grove EA: "FGF8 acts as a classic diffusible morphogen to pattern the neocortex.", Development, 137(20), 3439-48 (2010)

  12. 12

    Okada N, Sasaki T, Shimogori T, and Nishihara H: "Emergence of mammals by emergency: exaptation.", Genes Cells, 15(8), 801-12 (2010)

  13. 13

    Aggarwal M, Mori S, Shimogori T, Blackshaw S, and Zhang J: "Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain.", Magn Reson Med, 64(1), 249-61 (2010)

  14. 14

    Shimogori T*, Lee DA, Miranda-Angulo A, Yang Y, Jiang L, Yoshida AC, Kataoka A, Mashiko H, Avetisyan M, Qi L, Qian J, and Blackshaw S*.: "A genomic atlas of mouse hypothalamic development.", Nat Neurosci., 13:767-75. *corresponding authors.  (2010)

  15. 15

    Fabre PJ, Shimogori T, and Charron F: "Segregation of ipsilateral retinal ganglion cell axons at the optic chiasm requires the Shh receptor Boc.", J Neurosci, 30(1), 266-75 (2010)

  16. 16

    Suzuki-Hirano A, and Shimogori T: "The role of Fgf8 in telencephalic and diencephalic patterning.", Semin Cell Dev Biol, 20(6), 719-25 (2009)

  17. 17

    Kataoka A, and Shimogori T: "Fgf8 controls regional identity in the developing thalamus.", Development, 135(17), 2873-81 (2008)

  18. 18

    Shimogori T, and Ogawa M: "Gene application with in utero electroporation in mouse embryonic brain.", Dev Growth Differ, 50(6), 499-506 (2008)

  19. 19

    Imayoshi I, Shimogori T, Ohtsuka T, and Kageyama R: "Hes genes and neurogenin regulate non-neural versus neural fate specification in the dorsal telencephalic midline.", Development, 135(15), 2531-41 (2008)

  20. 20

    Shimogori T.: "Patterning of the neocortex and the thalamus for correct wiring.", No To Hattatsu, 40(3), 221-7 (2008)

  21. 21

    Sasaki T, Nishihara H, Hirakawa M, Fujimura K, Tanaka M, Kokubo N, Kimura-Yoshida C, Matsuo I, Sumiyama K, Saitou N, Shimogori T, and Okada N: "Possible involvement of SINEs in mammalian-specific brain formation.", Proc Natl Acad Sci U S A, 105(11), 4220-5 (2008)

  22. 22

    Kinameri E, Inoue T, Aruga J, Imayoshi I, Kageyama R, Shimogori T, and Moore AW: "Prdm proto-oncogene transcription factor family expression and interaction with the Notch-Hes pathway in mouse neurogenesis.", PLoS One, 3(12), e3859 (2008)

  23. 23

    Kitao Y, Imai Y, Ozawa K, Kataoka A, Ikeda T, Soda M, Nakimawa K, Kiyama H, Stern DM, Hori O, Wakamatsu K, Itoh S, Itohara S, Takahashi R, and Ogawa S: "Pael receptor induces death of dopaminergic neurons in the substantia nigra via endoplasmic reticulum stress and dopamine toxicity, which is enhanced under condition of parkin inactivation", Human Molecular Genetics, 16, 50-60 (2007)

  24. 24

    Shimogori T, and Grove EA: "Fibroblast growth factor 8 regulates neocortical guidance of area-specific thalamic innervation.", J Neurosci, 25(28), 6550-60 (2005)

  25. 25

    Shimogori T, Banuchi V, Ng HY, Strauss JB, and Grove EA: "Embryonic signaling centers expressing BMP, WNT and FGF proteins interact to pattern the cerebral cortex.", Development, 131(22), 5639-47 (2004)

  26. 26

    Shimogori T, VanSant J, Paik E, and Grove EA: "Members of the Wnt, Fz, and Frp gene families expressed in postnatal mouse cerebral cortex.", J Comp Neurol, 473(4), 496-510 (2004)